Welcome to AutoModel

AutoModel is a semi-automatic service that allows predict the protein structure by homology modeling using an intuitive interface use and a with greater control of experimental parameters. As a differential compared to other online modeling systems, the Automodel has a module of models analysis, based on refinement of loop regions. Moreover, AutoModel reconizes and model heteroatoms family (Zn, Cl, Mg, etc).

Features of AutoModel:

Easy to use graphical interface.
Suport full Homology Modeling Pipeline:

Searching structural templates;
Sequence alignments;
Protein modelling;
Model refinement;
Loop refinement.

Suports modeling HETEROATOMS family.
AutoModel uses Modeller software as modelling engine.
Assesment made by Procheck.
In the end of modellig, the user can made a loop refinement of generated model.
Entire developed using the Python programing language.
AutoModel uses internet architecture for lower computational cost.

*AutoModel is maintained by João Luiz de Almeida Filho and Jorge Hernandez Fernandez at the Laboratório de Química e Função de Proteínas e Peptídeos in the Universidade Estadual do Norte Fluminense Darcy Ribeiro.